Microarray

Softwares

Microarray Literature

Microarray Protocols

Web Links

Softwares

• ArrayMaker Application
• ArrayMaker v1.8.5
• ArrayMaker v1.8.8 Latest Version

Microarray Literature

Microarray Protocols

• Preparation of total RNA from cultured human cells.

• Preparation of polyA+ mRNA from total human RNA.

• Amplification and purification of cDNAs for microarray manufacture.

• Microarray manufacture and processing.

• Generating control mRNAs by in vitro transcription.

• Generating fluorescent cDNA controls by linear PCR.

• Preparation of fluorescent probes from total human mRNA.

• cDNA microarray hybridization and washing.

• Gene expression analysis with microarrays.

• Mutation detection with oligonucleotide microarrays.

• Protocols for Making Drosophila Arrays  

• Preparation of Slides  

• Preparation of DNA Samples  

• Post-Processing of Arrays  

• Preparation of Fluorescent DNA Probe from Yeast mRNA   

• Preparation of Fluorescent Probe from Human RNA  

• Preparation of Fluorescent Probe from E. coli RNA  

• Preparation of Fluorescent DNA Probe from Genomic DNA

• Cyanine Dye HPLC Purification  

• Modified Eberwine ("antisense") RNA Amplification Protocol  

• Hybridization of Arrays

• Comparative Gene Expression Study Using Microarray  

• Microarray Hybridization Protocols  

Web Links

	An Introduction to DNA Microarray Technology - Alan J. Robinson.
	Anatomy of a Comparative Gene Expression Study, Jeremy Buhler, University of Washington.
	Array-Pro Analyzer is an indispensable tool for the nascent microarray and high-throughput screening research efforts fueling the genomics, proteomics, drug discovery and bioinformatics revolution.
	ArrayExpress Database - a public repository for microarray based gene expression data.
	ArrayMaker v1.8.5.
	Chips to Hits 2000 - IBC's 7th Annual Biochip Technologies Conference (November 6-9, 2000 in Philadelphia)
	Crazy Quant - Array Image Spot Finding and Quantitation Software.
	DNA Microarray Services, HHMI Biopolymer/Keck Foundation Biotechnology Resource Laboratory..
	Expertise: Characterization of differential gene expression on the genome level, Institute of Biotechnology 1 Research Center Jülich.
	Gene Chips (DNA Microarrays)--- Monitoring the Genome on a Chip.
	GeneData Expressionist is a powerful software system for the institution-wide computational analysis of microarray data. The system is designed for high-performance data analysis, data structuring and data visualization.
	GeneMaths is a software package from Applied Maths, designed for complete analysis of high density microarrays and gene chips.
	Microarray group at the University of Manchester.
	Microarray Project (µAP) - The Microarray Project is a collaborative research effort between numerous intramural scientists in multiple Institutes.
	Microarray project at the Ecole Normale Superieure (Paris). Principle, images, protocols, publications, useful links.
	MicroArray Suite is Scanalytics new image analysis software product used specifically for extracting and visualizing DNA microarray data.
	Microarrays at Ontario Cancer Institute - a Leader in Canadian Microarray Technology.
	Microarrays.org - a public source for microarraying information,tools and protocols.
	Resources for M icroarray Technology - A collaborative project led by Virginia Tech and the Forest Biotechnology Group at North Carolina State University.
	ScanAlyze - Image Analysis (extracts data from fluorescence images of arrays). Free of charge to academic and non-profit institutions.
	The MGuide. Version 2.0 - The Brown Lab's complete guide to microarraying for the molecular biologist.
	TIGR ArrayViewer - A software tool designed to facilitate the presentation and analysis of microarray expression data, leading to the identification of genes that are differentially expressed.
	TIGR Spotfinder is a software tool designed for Microarray image processing using the TIFF image files generated by most microarray scanners.
	Vanderbilt University Microarray Core Facility.

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